ENSDARG00000105669


Danio rerio

Features
Gene ID: ENSDARG00000105669
  
Biological name :si:dkey-10f23.2
  
Synonyms : si:dkey-10f23.2
  
Possible biological names infered from orthology : B1AY10 / NFX1 / nuclear transcription factor, X-box binding 1 / Q12986 / Transcriptional repressor NF-X1
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 41491493
Gene end: 41512999
  
Corresponding Affymetrix probe sets: Dr.16086.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000142738
NCBI entrez gene - 562071     See in Manteia.
RefSeq - XM_685467
swissprot - A0A1D5NSC5
ZFIN ID - ZDB-GENE-160728-101
Ensembl - ENSDARG00000105669
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFX1ENSGALG00000043724Gallus gallus
 NFX1ENSG00000086102Homo sapiens
 Nfx1ENSMUSG00000028423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfxl1 / nuclear transcription factor, X-box binding-like 1 / Q6ZNB6*ENSDARG0000007012721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000967  Zinc finger, NF-X1-type
 IPR001374  R3H domain
 IPR001841  Zinc finger, RING-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR034076  Transcriptional repressor NF-X1, R3H domain
 IPR034078  Transcription factor NFX1 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr