ENSG00000022355


Homo sapiens

Features
Gene ID: ENSG00000022355
  
Biological name :GABRA1
  
Synonyms : GABRA1 / gamma-aminobutyric acid type A receptor alpha1 subunit / P14867
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q34
Gene start: 161847063
Gene end: 161899981
  
Corresponding Affymetrix probe sets: 206678_at (Human Genome U133 Plus 2.0 Array)   244118_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430895
Ensembl peptide - ENSP00000489033
Ensembl peptide - ENSP00000490804
Ensembl peptide - ENSP00000490684
Ensembl peptide - ENSP00000490360
Ensembl peptide - ENSP00000490320
Ensembl peptide - ENSP00000490002
Ensembl peptide - ENSP00000489839
Ensembl peptide - ENSP00000489738
Ensembl peptide - ENSP00000489434
Ensembl peptide - ENSP00000023897
Ensembl peptide - ENSP00000377517
Ensembl peptide - ENSP00000393097
Ensembl peptide - ENSP00000415441
Ensembl peptide - ENSP00000430435
Ensembl peptide - ENSP00000430507
NCBI entrez gene - 2554     See in Manteia.
OMIM - 137160
RefSeq - NM_001127644
RefSeq - NM_001127645
RefSeq - NM_001127648
RefSeq - NM_000806
RefSeq - NM_001127643
RefSeq Peptide - NP_001121116
RefSeq Peptide - NP_001121117
RefSeq Peptide - NP_001121120
RefSeq Peptide - NP_000797
RefSeq Peptide - NP_001121115
swissprot - P14867
swissprot - E5RJS3
swissprot - E5RHL6
swissprot - A0A1B0GVW9
swissprot - A0A1B0GV38
swissprot - A0A1B0GU82
swissprot - A0A0U1RRB2
swissprot - A0A0U1RQJ3
swissprot - E5RK60
Ensembl - ENSG00000022355
  
Related genetic diseases (OMIM): 611136 - {Epilepsy, childhood absence, susceptibility to, 4}, 611136
  615744 - Epileptic encephalopathy, early infantile, 19, 615744
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gabra1ENSDARG00000068989Danio rerio
 GABRA1ENSGALG00000001698Gallus gallus
 Gabra1ENSMUSG00000010803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GABRA2 / P47869 / gamma-aminobutyric acid type A receptor alpha2 subunitENSG0000015183476
GABRA3 / P34903 / gamma-aminobutyric acid type A receptor alpha3 subunitENSG0000001167771
GABRA5 / P31644 / gamma-aminobutyric acid type A receptor alpha5 subunitENSG0000018629770
GABRA4 / P48169 / gamma-aminobutyric acid type A receptor alpha4 subunitENSG0000010915857
GABRA6 / Q16445 / gamma-aminobutyric acid type A receptor alpha6 subunitENSG0000014586356
GABRG2 / P18507 / gamma-aminobutyric acid type A receptor gamma2 subunitENSG0000011332743
GABRG1 / Q8N1C3 / gamma-aminobutyric acid type A receptor gamma1 subunitENSG0000016328542
GABRG3 / Q99928 / gamma-aminobutyric acid type A receptor gamma3 subunitENSG0000018225641
GABRE / P78334 / gamma-aminobutyric acid type A receptor epsilon subunitENSG0000010228735


Protein motifs (from Interpro)
Interpro ID Name
 IPR001390  Gamma-aminobutyric-acid A receptor, alpha subunit
 IPR005431  Gamma-aminobutyric-acid A receptor, alpha 1 subunit
 IPR006028  Gamma-aminobutyric acid A receptor/Glycine receptor alpha
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site
 IPR036719  Neurotransmitter-gated ion-channel transmembrane domain superfamily
 IPR036734  Neurotransmitter-gated ion-channel ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007214 gamma-aminobutyric acid signaling pathway TAS
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0051932 synaptic transmission, GABAergic ISS
 biological_processGO:0060078 regulation of postsynaptic membrane potential IEA
 biological_processGO:0071420 cellular response to histamine IEA
 biological_processGO:1902476 chloride transmembrane transport IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:1902710 GABA receptor complex ISS
 cellular_componentGO:1902711 GABA-A receptor complex IDA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0004890 GABA-A receptor activity TAS
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0008144 drug binding ISS
 molecular_functionGO:0016917 GABA receptor activity ISS
 molecular_functionGO:0022851 GABA-gated chloride ion channel activity IDA
 molecular_functionGO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IEA


Pathways (from Reactome)
Pathway description
Neurotransmitter receptors and postsynaptic signal transmission
GABA A receptor activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002266 Focal clonic seizures 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0006813 Unilateral clonic seizures 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0011151 Obtundation status "Atypical absence lasting for more than 30 minutes." [HPO:jalbers]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0025356 Pschomotor retardation 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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