ENSG00000066117


Homo sapiens

Features
Gene ID: ENSG00000066117
  
Biological name :SMARCD1
  
Synonyms : Q96GM5 / SMARCD1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.12
Gene start: 50084972
Gene end: 50100712
  
Corresponding Affymetrix probe sets: 203183_s_at (Human Genome U133 Plus 2.0 Array)   209518_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449825
Ensembl peptide - ENSP00000448030
Ensembl peptide - ENSP00000448627
Ensembl peptide - ENSP00000370924
Ensembl peptide - ENSP00000378414
Ensembl peptide - ENSP00000447386
Ensembl peptide - ENSP00000447909
NCBI entrez gene - 6602     See in Manteia.
OMIM - 601735
RefSeq - XM_011538695
RefSeq - NM_003076
RefSeq - NM_139071
RefSeq - XM_005269107
RefSeq Peptide - NP_620710
RefSeq Peptide - NP_003067
swissprot - F8VRQ4
swissprot - F8VUB0
swissprot - F8VW95
swissprot - H0YHV1
swissprot - F8VZ70
swissprot - Q96GM5
Ensembl - ENSG00000066117
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcd1ENSDARG00000019004Danio rerio
 SMARCD1ENSGALG00000029247Gallus gallus
 Q61466ENSMUSG00000023018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6STE5 / SMARCD3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3ENSG0000008201468
Q92925 / SMARCD2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2ENSG0000010860463


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain
 IPR036885  SWIB/MDM2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006337 nucleosome disassembly IDA
 biological_processGO:0006338 chromatin remodeling IMP
 biological_processGO:0006357 regulation of transcription by RNA polymerase II NAS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0048096 chromatin-mediated maintenance of transcription IMP
 biological_processGO:0071398 cellular response to fatty acid IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003713 transcription coactivator activity NAS
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0032947 protein-containing complex scaffold activity IDA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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