ENSDARG00000019004


Danio rerio

Features
Gene ID: ENSDARG00000019004
  
Biological name :smarcd1
  
Synonyms : smarcd1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
  
Possible biological names infered from orthology : Q61466 / Q96GM5
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 7009062
Gene end: 7025393
  
Corresponding Affymetrix probe sets: Dr.3403.1.S1_at (Zebrafish Array)   NM_198358_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009407
NCBI entrez gene - 323115     See in Manteia.
RefSeq - NM_198358
RefSeq Peptide - NP_938172
swissprot - Q802C8
ZFIN ID - ZDB-GENE-030131-1835
Ensembl - ENSDARG00000019004
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCD1ENSGALG00000029247Gallus gallus
 Q96GM5ENSG00000066117Homo sapiens
 Q61466ENSMUSG00000023018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcd3b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000001996970
smarcd3a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000003878670
smarcd2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 / Q92925* / Q99JR8*ENSDARG0000008887763


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0021510 spinal cord development IMP
 biological_processGO:0060216 definitive hemopoiesis IMP
 biological_processGO:0061053 somite development IMP
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000075 spinal cord spinal cord decreased size , abnormal
spinal cord decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart morphology , abnormal
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 ZFA:0000155 somite somite morphology , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism apoptotic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk curved ventral , abnormal
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 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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