ENSDARG00000088877


Danio rerio

Features
Gene ID: ENSDARG00000088877
  
Biological name :smarcd2
  
Synonyms : smarcd2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
  
Possible biological names infered from orthology : Q92925 / Q99JR8
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 10134366
Gene end: 10160941
  
Corresponding Affymetrix probe sets: Dr.23049.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127084
Ensembl peptide - ENSDARP00000104597
NCBI entrez gene - 564317     See in Manteia.
RefSeq - XM_687657
swissprot - R4GF19
swissprot - E7EYW7
ZFIN ID - ZDB-GENE-080215-1
Ensembl - ENSDARG00000088877
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCD2ENSGALG00000029304Gallus gallus
 Q92925ENSG00000108604Homo sapiens
 Q99JR8ENSMUSG00000078619Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcd3a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000003878665
smarcd1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 / Q61466* / Q96GM5*ENSDARG0000001900464
smarcd3b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000001996964


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain
 IPR030090  SWI/SNF complex subunit BAF60B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0030223 neutrophil differentiation IMP
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009327 neutrophil neutrophil decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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