ENSDARG00000019969


Danio rerio

Features
Gene ID: ENSDARG00000019969
  
Biological name :smarcd3b
  
Synonyms : smarcd3b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b
  
Possible biological names infered from orthology : Q6P9Z1 / Q6STE5 / SMARCD3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 41436488
Gene end: 41489997
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000123933
Ensembl peptide - ENSDARP00000143200
Ensembl peptide - ENSDARP00000143064
Ensembl peptide - ENSDARP00000015411
NCBI entrez gene - 562140     See in Manteia.
RefSeq - XM_005166419
RefSeq Peptide - NP_001120778
swissprot - F6NVB1
swissprot - B2KL77
swissprot - F8W4A9
swissprot - A0A1L1QZS5
ZFIN ID - ZDB-GENE-080509-2
Ensembl - ENSDARG00000019969
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCD3ENSGALG00000043137Gallus gallus
 Q6STE5ENSG00000082014Homo sapiens
 Q6P9Z1ENSMUSG00000028949Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcd3a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000003878690
smarcd1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 / Q61466* / Q96GM5*ENSDARG0000001900475
smarcd2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 / Q92925* / Q99JR8*ENSDARG0000008887768


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003007 heart morphogenesis IGI
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0055007 cardiac muscle cell differentiation IGI
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart inverted , abnormal
heart morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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