ENSGALG00000043137


Gallus gallus

Features
Gene ID: ENSGALG00000043137
  
Biological name :SMARCD3
  
Synonyms : SMARCD3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
  
Possible biological names infered from orthology : Q6P9Z1 / Q6STE5
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 33407
Gene end: 91790
  
Corresponding Affymetrix probe sets: GgaAffx.21225.1.S1_at (Chicken Array)   GgaAffx.8276.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051880
NCBI entrez gene - 430336     See in Manteia.
RefSeq - XM_004939026
RefSeq - XM_015281035
RefSeq - XM_015281036
RefSeq - XM_015281037
RefSeq - XM_015281038
RefSeq - XM_015281039
RefSeq - XM_015281041
RefSeq - XM_004939024
swissprot - A0A1D5PGF8
Ensembl - ENSGALG00000043137
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcd3aENSDARG00000038786Danio rerio
 smarcd3bENSDARG00000019969Danio rerio
 Q6STE5ENSG00000082014Homo sapiens
 Q6P9Z1ENSMUSG00000028949Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCD1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 / Q61466* / Q96GM5*ENSGALG0000002924773
SMARCD2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 / Q92925* / Q99JR8*ENSGALG0000002930466


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002052 positive regulation of neuroblast proliferation IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0003139 secondary heart field specification IEA
 biological_processGO:0003219 cardiac right ventricle formation IEA
 biological_processGO:0003407 neural retina development IEA
 biological_processGO:0006337 nucleosome disassembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0042692 muscle cell differentiation IEA
 biological_processGO:0043393 regulation of protein binding IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0035257 nuclear hormone receptor binding IEA


Pathways (from Reactome)
Pathway description
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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