ENSDARG00000038786


Danio rerio

Features
Gene ID: ENSDARG00000038786
  
Biological name :smarcd3a
  
Synonyms : smarcd3a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a
  
Possible biological names infered from orthology : Q6P9Z1 / Q6STE5 / SMARCD3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 32515846
Gene end: 32558795
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000056640
Ensembl peptide - ENSDARP00000122275
Ensembl peptide - ENSDARP00000120548
Ensembl peptide - ENSDARP00000114118
NCBI entrez gene - 564652     See in Manteia.
swissprot - E9QHE9
swissprot - E9QC50
swissprot - E7F1T4
swissprot - F1QLA9
ZFIN ID - ZDB-GENE-070912-491
Ensembl - ENSDARG00000038786
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCD3ENSGALG00000043137Gallus gallus
 Q6STE5ENSG00000082014Homo sapiens
 Q6P9Z1ENSMUSG00000028949Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcd3b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000001996990
smarcd1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 / Q61466* / Q96GM5*ENSDARG0000001900475
smarcd2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 / Q92925* / Q99JR8*ENSDARG0000008887769


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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