ENSGALG00000029304


Gallus gallus
swibdomainswisnfcomplexchromatinremodelingrunxSMARCD2mdmsubunitbafbnucleosomedisassemblyatp-dependentnucleoplasminteractsco-factorspreciseeffecttargetsknown

Features
Gene ID: ENSGALG00000029304
  
Biological name :SMARCD2
  
Synonyms : SMARCD2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
  
Possible biological names infered from orthology : Q92925 / Q99JR8
  
Species: Gallus gallus
  
Chr. number: 27
Strand: -1
Band:
Gene start: 1877240
Gene end: 1888868
  
Corresponding Affymetrix probe sets: Gga.1069.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046347
NCBI entrez gene - 428275     See in Manteia.
RefSeq - XM_015299406
swissprot - A0A1D5P116
Ensembl - ENSGALG00000029304
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcd2ENSDARG00000088877Danio rerio
 Q92925ENSG00000108604Homo sapiens
 Q99JR8ENSMUSG00000078619Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCD1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 / Q61466* / Q96GM5*ENSGALG0000002924769
SMARCD3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 / Q6P9Z1* / Q6STE5*ENSGALG0000004313765


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain
 IPR030090  SWI/SNF complex subunit BAF60B


Gene Ontology (GO)
cellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organization
cellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0006337 nucleosome disassembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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