ENSG00000101104


Homo sapiens

Features
Gene ID: ENSG00000101104
  
Biological name :PABPC1L
  
Synonyms : PABPC1L / poly(A) binding protein cytoplasmic 1 like / Q4VXU2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.12
Gene start: 44910062
Gene end: 44959035
  
Corresponding Affymetrix probe sets: 226670_s_at (Human Genome U133 Plus 2.0 Array)   231838_at (Human Genome U133 Plus 2.0 Array)   233104_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000445661
Ensembl peptide - ENSP00000217073
Ensembl peptide - ENSP00000217074
Ensembl peptide - ENSP00000217075
Ensembl peptide - ENSP00000255136
Ensembl peptide - ENSP00000361906
Ensembl peptide - ENSP00000361909
Ensembl peptide - ENSP00000361911
Ensembl peptide - ENSP00000361913
Ensembl peptide - ENSP00000432620
NCBI entrez gene - 80336     See in Manteia.
RefSeq - NM_001124756
RefSeq Peptide - NP_001118228
swissprot - Q4VXT4
swissprot - Q4VXT5
swissprot - Q4VXT6
swissprot - Q4VXT8
swissprot - F2Z2Z0
swissprot - Q4VXU2
swissprot - H0Y386
Ensembl - ENSG00000101104
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpc1lENSDARG00000002597Danio rerio
 PABPC1LENSGALG00000004123Gallus gallus
 Pabpc1lENSMUSG00000054582Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P11940 / PABPC1 / poly(A) binding protein cytoplasmic 1ENSG0000007075671
PABPC4 / Q13310 / poly(A) binding protein cytoplasmic 4ENSG0000009062168
PABPC3 / Q9H361 / poly(A) binding protein cytoplasmic 3ENSG0000015184667
P0CB38 / PABPC4L / poly(A) binding protein cytoplasmic 4 likeENSG0000025453538
PABPC5 / Q96DU9 / poly(A) binding protein cytoplasmic 5ENSG0000017474036
Q5JQF8 / PABPC1L2B / poly(A) binding protein cytoplasmic 1 like 2BENSG0000018438823
Q5JQF8 / PABPC1L2A / poly(A) binding protein cytoplasmic 1 like 2AENSG0000018628823
RBMS3 / Q6XE24 / RNA binding motif single stranded interacting protein 3ENSG0000014464216
RBMS1 / P29558 / RNA binding motif single stranded interacting protein 1ENSG0000015325015
RBMS2 / Q15434 / RNA binding motif single stranded interacting protein 2ENSG0000007606714
ELAVL2 / Q12926 / ELAV like RNA binding protein 2ENSG0000010710513
PUF60 / Q9UHX1 / poly(U) binding splicing factor 60ENSG0000017995013
ELAVL1 / Q15717 / ELAV like RNA binding protein 1ENSG0000006604412
ELAVL4 / P26378 / ELAV like RNA binding protein 4ENSG0000016237412
ELAVL3 / Q14576 / ELAV like RNA binding protein 3ENSG0000019636112


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4
 IPR035979  RNA-binding domain superfamily
 IPR036053  PABC (PABP) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001556 oocyte maturation IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0048096 chromatin-mediated maintenance of transcription IEA
 biological_processGO:0051647 nucleus localization IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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