ENSG00000104237


Homo sapiens

Features
Gene ID: ENSG00000104237
  
Biological name :RP1
  
Synonyms : P56715 / RP1 / RP1, axonemal microtubule associated
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q11.23
Gene start: 54509422
Gene end: 54871720
  
Corresponding Affymetrix probe sets: 224021_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489857
Ensembl peptide - ENSP00000490104
Ensembl peptide - ENSP00000220676
NCBI entrez gene - 6101     See in Manteia.
OMIM - 603937
RefSeq - XM_017014158
RefSeq - NM_006269
RefSeq - XM_017013721
RefSeq - XM_017013722
RefSeq - XM_017014157
RefSeq Peptide - NP_006260
swissprot - A0A1B0GUH0
swissprot - A0A1B0GTV9
swissprot - P56715
Ensembl - ENSG00000104237
  
Related genetic diseases (OMIM): 180100 - Retinitis pigmentosa 1, 180100
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rp1ENSDARG00000077687Danio rerio
 Rp1ENSMUSG00000025900Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RP1L1 / RP1 like 1ENSG0000018363814
DCDC2 / Q9UHG0 / doublecortin domain containing 2ENSG000001460384
A2VCK2 / DCDC2B / doublecortin domain containing 2BENSG000002220464
A8MYV0 / DCDC2C / doublecortin domain containing 2CENSG000002148663


Protein motifs (from Interpro)
Interpro ID Name
 IPR001024  PLAT/LH2 domain
 IPR003533  Doublecortin domain
 IPR008996  Cytokine IL1/FGF
 IPR033013  Oxygen-regulated protein 1
 IPR036392  PLAT/LH2 domain superfamily
 IPR036572  Doublecortin domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007603 phototransduction, visible light TAS
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035082 axoneme assembly IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0042461 photoreceptor cell development IBA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0046548 retinal rod cell development IEA
 biological_processGO:0046549 retinal cone cell development IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060042 retina morphogenesis in camera-type eye IEA
 biological_processGO:0071482 cellular response to light stimulus IEA
 biological_processGO:0098869 cellular oxidant detoxification IEA
 biological_processGO:1902857 positive regulation of non-motile cilium assembly IEA
 cellular_componentGO:0001750 photoreceptor outer segment ISS
 cellular_componentGO:0001917 photoreceptor inner segment IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005875 microtubule associated complex IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip IEA
 molecular_functionGO:0004096 catalase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008017 microtubule binding ISS
 molecular_functionGO:0020037 heme binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001133 Constricted visual fields 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007688 Absent rod-and cone-mediated responses on ERG 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007737 Bony spicule pigmentary retinopathy 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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