ENSG00000110844


Homo sapiens
domainPRPF40Bwwffsuperfamilymrnasplicingrnaubindingviaspliceosomeprocessingnucleussnrnpnuclearspeck-typeprespliceosomeprotein

Features
Gene ID: ENSG00000110844
  
Biological name :PRPF40B
  
Synonyms : pre-mRNA processing factor 40 homolog B / PRPF40B / Q6NWY9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.12
Gene start: 49568218
Gene end: 49644666
  
Corresponding Affymetrix probe sets: 226966_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000261897
Ensembl peptide - ENSP00000369634
Ensembl peptide - ENSP00000448073
Ensembl peptide - ENSP00000449485
Ensembl peptide - ENSP00000449569
NCBI entrez gene - 25766     See in Manteia.
RefSeq - XM_017019139
RefSeq - XM_011538144
RefSeq - XM_017019135
RefSeq - XM_017019136
RefSeq - XM_017019137
RefSeq - XM_017019138
RefSeq - NM_001031698
RefSeq - NM_012272
RefSeq - XM_006719324
RefSeq - XM_006719325
RefSeq - XM_011538135
RefSeq - XM_011538136
RefSeq - XM_011538137
RefSeq - XM_011538138
RefSeq - XM_011538139
RefSeq - XM_011538140
RefSeq - XM_011538141
RefSeq - XM_011538143
RefSeq Peptide - NP_001026868
RefSeq Peptide - NP_036404
swissprot - H0YII7
swissprot - Q6NWY9
swissprot - F8VU11
Ensembl - ENSG00000110844
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Prpf40bENSMUSG00000023007Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O75400 / PRPF40A / pre-mRNA processing factor 40 homolog AENSG0000019650458
O14776 / TCERG1 / transcription elongation regulator 1ENSG0000011364919
Q5VWI1 / TCERG1L / transcription elongation regulator 1 likeENSG0000017676910


Protein motifs (from Interpro)
Interpro ID Name
 IPR001202  WW domain
 IPR002713  FF domain
 IPR036020  WW domain superfamily
 IPR036517  FF domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processnitrogen compound metabolic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic processorganic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingprotein bindingprotein binding
cellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellcellorganelleorganelleprotein-containing complexprotein-containing complexmembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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