ENSG00000138380


Homo sapiens
transcriptionCARFrnapolymeraseiiregulationresponseionpromoterdnabindingfactordna-templatedcellularcalciumproximalsequence-specificactivitycalcium-responsivepotassiumnucleusnucleoplasmnucleolustranscriptionalactivatordna-binding

Features
Gene ID: ENSG00000138380
  
Biological name :CARF
  
Synonyms : calcium responsive transcription factor / CARF / Q8N187
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q33.2
Gene start: 202912214
Gene end: 202987063
  
Corresponding Affymetrix probe sets: 1555391_a_at (Human Genome U133 Plus 2.0 Array)   219834_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000395276
Ensembl peptide - ENSP00000394990
Ensembl peptide - ENSP00000396221
Ensembl peptide - ENSP00000416812
Ensembl peptide - ENSP00000416160
Ensembl peptide - ENSP00000415948
Ensembl peptide - ENSP00000414789
Ensembl peptide - ENSP00000414644
Ensembl peptide - ENSP00000413296
Ensembl peptide - ENSP00000413166
Ensembl peptide - ENSP00000409985
Ensembl peptide - ENSP00000408998
Ensembl peptide - ENSP00000401918
Ensembl peptide - ENSP00000316224
Ensembl peptide - ENSP00000384006
Ensembl peptide - ENSP00000387785
Ensembl peptide - ENSP00000391617
Ensembl peptide - ENSP00000392274
Ensembl peptide - ENSP00000394298
NCBI entrez gene - 79800     See in Manteia.
OMIM - 607586
RefSeq - XM_017004966
RefSeq - NM_001104586
RefSeq - NM_001282910
RefSeq - NM_001282911
RefSeq - NM_001282912
RefSeq - NM_001322427
RefSeq - NM_001322428
RefSeq - NM_001322429
RefSeq - NM_001322430
RefSeq - NM_024744
RefSeq - XM_005246858
RefSeq - XM_005246859
RefSeq - XM_005246864
RefSeq - XM_006712760
RefSeq - XM_011511867
RefSeq - XM_011511868
RefSeq - XM_011511869
RefSeq - XM_017004961
RefSeq - XM_017004962
RefSeq - XM_017004963
RefSeq - XM_017004964
RefSeq - XM_017004965
RefSeq Peptide - NP_001098056
RefSeq Peptide - NP_001269839
RefSeq Peptide - NP_001269840
RefSeq Peptide - NP_001269841
RefSeq Peptide - NP_001309356
RefSeq Peptide - NP_001309357
RefSeq Peptide - NP_001309358
RefSeq Peptide - NP_079020
swissprot - C9JI92
swissprot - C9JCD6
swissprot - C9JBK9
swissprot - Q8N187
swissprot - F6SXV3
swissprot - F8WC01
swissprot - F8WDH0
swissprot - F8WDW1
swissprot - A0A1B0GX63
swissprot - A0A024R427
swissprot - C9JZI6
swissprot - C9JZ91
swissprot - C9JT99
swissprot - C9JSN4
swissprot - C9JN29
swissprot - C9JL40
Ensembl - ENSG00000138380
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 carfENSDARG00000019950Danio rerio
 CARFENSGALG00000008474Gallus gallus
 CarfENSMUSG00000026017Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029309  Calcium-responsive transcription factor


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processresponse to chemicalcellular response to stimulusnitrogen compound menitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic pcellular metabolic processprimary metabolic prprimary metabolic processorganic substance meorganic substance metabolic processresponse to chemicalresponse to chemicalcellular response tocellular response to stimulus
organic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityDNA-binding transcription factor activity
cellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0035865 cellular response to potassium ion IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion IDA
 biological_processGO:0071277 cellular response to calcium ion IDA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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