ENSGALG00000008474


Gallus gallus

Features
Gene ID: ENSGALG00000008474
  
Biological name :CARF
  
Synonyms : calcium responsive transcription factor / CARF
  
Possible biological names infered from orthology : Q8N187 / Q8VHI4
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 12038585
Gene end: 12059982
  
Corresponding Affymetrix probe sets: GgaAffx.5336.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000032777
Ensembl peptide - ENSGALP00000052081
Ensembl peptide - ENSGALP00000050688
NCBI entrez gene - 424090     See in Manteia.
RefSeq - XM_004942633
RefSeq - XM_015289502
RefSeq - XM_015289503
RefSeq - XM_421946
swissprot - A0A1D5PD47
swissprot - F1NVN9
swissprot - A0A1D5PH05
Ensembl - ENSGALG00000008474
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 carfENSDARG00000019950Danio rerio
 CARFENSG00000138380Homo sapiens
 CarfENSMUSG00000026017Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029309  Calcium-responsive transcription factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0035865 cellular response to potassium ion IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion IEA
 biological_processGO:0071277 cellular response to calcium ion IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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