ENSG00000142539


Homo sapiens

Features
Gene ID: ENSG00000142539
  
Biological name :AC020909.1
  
Synonyms : AC020909.1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.33
Gene start: 50415799
Gene end: 50428409
  
Corresponding Affymetrix probe sets: 203422_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000473233
swissprot - M0R3H8
Ensembl - ENSG00000142539
  

This gene has been taged as a transcription factor by TFT
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SpibENSMUSG00000008193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPIB / Q01892 / Spi-B transcription factorENSG0000026940464
SPI1 / P17947 / Spi-1 proto-oncogeneENSG0000006633627
SPIC / Q8N5J4 / Spi-C transcription factorENSG0000016621118


Protein motifs (from Interpro)
Interpro ID Name
 IPR000418  Ets domain
 IPR006134  DNA-directed DNA polymerase, family B, multifunctional domain
 IPR025687  C4-type zinc-finger of DNA polymerase delta
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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