ENSG00000145016


Homo sapiens

Features
Gene ID: ENSG00000145016
  
Biological name :RUBCN
  
Synonyms : Q92622 / RUBCN / RUN and cysteine rich domain containing beclin 1 interacting protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q29
Gene start: 197671393
Gene end: 197749727
  
Corresponding Affymetrix probe sets: 1554612_at (Human Genome U133 Plus 2.0 Array)   1554613_a_at (Human Genome U133 Plus 2.0 Array)   1560138_at (Human Genome U133 Plus 2.0 Array)   212733_at (Human Genome U133 Plus 2.0 Array)   212735_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000409618
Ensembl peptide - ENSP00000405115
Ensembl peptide - ENSP00000411894
Ensembl peptide - ENSP00000485041
Ensembl peptide - ENSP00000273582
Ensembl peptide - ENSP00000296343
Ensembl peptide - ENSP00000390962
NCBI entrez gene - 9711     See in Manteia.
OMIM - 613516
RefSeq - XM_017007545
RefSeq - XM_005269374
RefSeq - XM_006713827
RefSeq - XM_006713828
RefSeq - XM_006713829
RefSeq - XM_006713830
RefSeq - XM_006713831
RefSeq - XM_017007543
RefSeq - XM_017007544
RefSeq - NM_001145642
RefSeq - NM_014687
RefSeq Peptide - NP_001139114
RefSeq Peptide - NP_055502
swissprot - H7C357
swissprot - H7C3H3
swissprot - E9PEM3
swissprot - A0A096LNI3
swissprot - Q92622
swissprot - H0Y6E6
Ensembl - ENSG00000145016
  
Related genetic diseases (OMIM): 615705 - ?Spinocerebellar ataxia, autosomal recessive 15, 615705
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rubcnENSDARG00000078752Danio rerio
 RUBCNENSGALG00000007557Gallus gallus
 RubcnENSMUSG00000035629Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H714 / RUBCNL / RUN and cysteine rich domain containing beclin 1 interacting protein likeENSG0000010244525
Q9Y4G2 / PLEKHM1 / pleckstrin homology and RUN domain containing M1ENSG0000022519016
Q6ZWE6 / PLEKHM3 / pleckstrin homology domain containing M3ENSG0000017838513
DEF8 / Q6ZN54 / differentially expressed in FDCP 8 homologENSG0000014099511


Protein motifs (from Interpro)
Interpro ID Name
 IPR004012  RUN domain
 IPR025258  Putative zinc-RING and/or ribbon
 IPR037213  RUN domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0010507 negative regulation of autophagy IMP
 biological_processGO:0043553 negative regulation of phosphatidylinositol 3-kinase activity IDA
 biological_processGO:0045806 negative regulation of endocytosis IMP
 biological_processGO:0071985 multivesicular body sorting pathway TAS
 biological_processGO:1901097 negative regulation of autophagosome maturation TAS
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002317 Unsteady gait 
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 HP:0003676 Progressive disorder 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr