ENSG00000158352


Homo sapiens

Features
Gene ID: ENSG00000158352
  
Biological name :SHROOM4
  
Synonyms : Q9ULL8 / SHROOM4 / shroom family member 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p11.22
Gene start: 50591647
Gene end: 50814302
  
Corresponding Affymetrix probe sets: 232404_at (Human Genome U133 Plus 2.0 Array)   244825_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000289292
Ensembl peptide - ENSP00000365188
Ensembl peptide - ENSP00000421450
NCBI entrez gene - 57477     See in Manteia.
OMIM - 300579
RefSeq - XM_017029686
RefSeq - NM_020717
RefSeq - XM_017029684
RefSeq - XM_017029685
RefSeq - XM_017029682
RefSeq - XM_017029683
RefSeq Peptide - NP_065768
swissprot - Q9ULL8
Ensembl - ENSG00000158352
  
Related genetic diseases (OMIM): 300434 - Stocco dos Santos X-linked mental retardation syndrome, 300434
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SHROOM4ENSGALG00000033953Gallus gallus
 Q1W617ENSMUSG00000068270Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8TF72 / SHROOM3 / shroom family member 3ENSG0000013877128
Q13796 / SHROOM2 / shroom family member 2ENSG0000014695025
Q2M3G4 / SHROOM1 / shroom family member 1ENSG0000016440310


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR014799  Apx/Shrm Domain 2
 IPR027685  Shroom family
 IPR027687  Shroom4
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007015 actin filament organization IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007420 brain development IDA
 biological_processGO:0030036 actin cytoskeleton organization NAS
 biological_processGO:0050890 cognition IDA
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IDA
 cellular_componentGO:0009925 basal plasma membrane IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0016460 myosin II complex IEA
 cellular_componentGO:0030864 cortical actin cytoskeleton IEA
 cellular_componentGO:0031941 filamentous actin IDA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0051015 actin filament binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000752 Hyperactivity 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002827 Dislocated hips 
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 HP:0003763 Bruxism 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0005280 Depressed nasal root and bridge 
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 HP:0200055 Small hands 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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