ENSG00000164946


Homo sapiens

Features
Gene ID: ENSG00000164946
  
Biological name :FREM1
  
Synonyms : FRAS1 related extracellular matrix 1 / FREM1 / Q5H8C1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p22.3
Gene start: 14734666
Gene end: 14910995
  
Corresponding Affymetrix probe sets: 228233_at (Human Genome U133 Plus 2.0 Array)   236031_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370262
Ensembl peptide - ENSP00000412597
Ensembl peptide - ENSP00000412940
Ensembl peptide - ENSP00000370257
Ensembl peptide - ENSP00000370278
NCBI entrez gene - 158326     See in Manteia.
OMIM - 608944
RefSeq - XM_017014330
RefSeq - NM_001177704
RefSeq - NM_144966
RefSeq - XM_017014326
RefSeq - XM_017014327
RefSeq - XM_017014328
RefSeq - XM_017014329
RefSeq - XM_005251382
RefSeq - XM_005251384
RefSeq - XM_006716729
RefSeq - XM_011517758
RefSeq - XM_017014316
RefSeq - XM_017014317
RefSeq - XM_017014318
RefSeq - XM_017014319
RefSeq - XM_017014320
RefSeq - XM_017014321
RefSeq - XM_017014322
RefSeq - XM_017014323
RefSeq - XM_017014324
RefSeq - XM_017014325
RefSeq Peptide - NP_001171175
RefSeq Peptide - NP_659403
swissprot - Q5H8C1
swissprot - F8WE85
Ensembl - ENSG00000164946
  
Related genetic diseases (OMIM): 248450 - Manitoba oculotrichoanal syndrome, 248450
  608980 - Bifid nose with or without anorectal and renal anomalies, 608980
  614485 - Trigonocephaly 2, 614485
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 frem1aENSDARG00000069473Danio rerio
 FREM1ENSGALG00000005426Gallus gallus
 Frem1ENSMUSG00000059049Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FREM2 / Q5SZK8 / FRAS1 related extracellular matrix protein 2ENSG0000015089332
FREM3 / P0C091 / FRAS1 related extracellular matrix 3ENSG0000018309028
FRAS1 / Q86XX4 / Fraser extracellular matrix complex subunit 1ENSG0000013875924
CSPG4 / Q6UVK1 / chondroitin sulfate proteoglycan 4ENSG0000017354616


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR013783  Immunoglobulin-like fold
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR032825  FRAS1-related extracellular matrix protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0097094 craniofacial suture morphogenesis IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
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 HP:0000104 Renal agenesis 
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 HP:0000143 Rectovaginal fistula "The presence of a fistula between the rectum and the vagina." [HPO:curators]
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 HP:0000200 Short lingual frenulum "The presence of an abnormally short lingual frenulum." [HPO:probinson]
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 HP:0000243 Trigonocephaly 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000414 Bulbous nose 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000456 Bifid nasal tip "A splitting of the nasal tip. This is a rare congenital deformity due to failure of the paired nasal processes to fuse to a single midline organ during early gestation." [HPO:curators]
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000579 Nasolacrimal duct obstruction 
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 HP:0000601 Hypotelorism 
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 HP:0000625 Eyelid, cleft "A short discontinuity of the margin of the lower or upper eyelid." [pmid:19125427]
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 HP:0000636 Upper eyelid coloboma "A `coloboma` (HP:0000589) of the `upper eyelid` (FMA:54439)." [HPO:probinson]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0001126 Cryptophthalmos "Cryptophthalmos is a condition of total absence of eyelids and the skin of forehead is continuous with that of cheek, in which the eyeball is completely concealed by the skin, which is stretched over the orbital cavity." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001545 Anteriorly placed anus "Anterior malposition of the anus." [HPO:curators]
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 HP:0001595 Hair abnormality 
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0010322 Abnormality of the 5th toe 
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 HP:0010720 Abnormal hair growth pattern "An abnormality of the distribution of hair growth." [HPO:probinson]
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 HP:0011330 Metopic synostosis "Premature fusion of the metopic suture." [DDD:awilkie]
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 HP:0011803 Bifid nose "Visually assessable vertical indentation, cleft, or depression of the nasal bridge, ridge and tip." [pmid:19152422]
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 HP:0012252 Abnormal respiratory system morphology "A structural anomaly of the respiratoy system." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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