ENSG00000171723


Homo sapiens

Features
Gene ID: ENSG00000171723
  
Biological name :GPHN
  
Synonyms : gephyrin / GPHN / Q9NQX3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q23.3
Gene start: 66507407
Gene end: 67181803
  
Corresponding Affymetrix probe sets: 220773_s_at (Human Genome U133 Plus 2.0 Array)   223319_at (Human Genome U133 Plus 2.0 Array)   234941_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452220
Ensembl peptide - ENSP00000451935
Ensembl peptide - ENSP00000452009
Ensembl peptide - ENSP00000312771
Ensembl peptide - ENSP00000417901
Ensembl peptide - ENSP00000438404
Ensembl peptide - ENSP00000450442
Ensembl peptide - ENSP00000450706
Ensembl peptide - ENSP00000451056
Ensembl peptide - ENSP00000451725
Ensembl peptide - ENSP00000451790
NCBI entrez gene - 10243     See in Manteia.
OMIM - 603930
RefSeq - XM_017020926
RefSeq - XM_017020915
RefSeq - XM_017020916
RefSeq - XM_017020917
RefSeq - XM_017020918
RefSeq - XM_017020919
RefSeq - XM_017020920
RefSeq - XM_017020921
RefSeq - XM_017020922
RefSeq - XM_017020923
RefSeq - XM_017020924
RefSeq - XM_017020925
RefSeq - NM_001024218
RefSeq - NM_020806
RefSeq - XM_005267254
RefSeq - XM_011536340
RefSeq - XM_011536342
RefSeq - XM_011536343
RefSeq - XM_011536344
RefSeq - XM_011536345
RefSeq - XM_011536346
RefSeq - XM_011536347
RefSeq - XM_017020913
RefSeq - XM_017020914
RefSeq Peptide - NP_001019389
RefSeq Peptide - NP_065857
swissprot - G3V4R0
swissprot - G3V582
swissprot - H0YIY4
swissprot - G3V355
swissprot - H0YJR5
swissprot - Q9NQX3
swissprot - F5H039
swissprot - H0YJ30
swissprot - G3V4D2
Ensembl - ENSG00000171723
  
Related genetic diseases (OMIM): 615501 - Molybdenum cofactor deficiency C, 615501
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gphnaENSDARG00000089076Danio rerio
 gphnbENSDARG00000100851Danio rerio
 GPHNENSGALG00000009587Gallus gallus
 GphnENSMUSG00000047454Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001453  MoaB/Mog domain
 IPR005110  MoeA, N-terminal and linker domain
 IPR005111  MoeA, C-terminal, domain IV
 IPR008284  Molybdenum cofactor biosynthesis, conserved site
 IPR036135  MoeA, N-terminal and linker domain superfamily
 IPR036425  MoaB/Mog-like domain superfamily
 IPR036688  MoeA, C-terminal, domain IV superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006777 Mo-molybdopterin cofactor biosynthetic process IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0010038 response to metal ion IMP
 biological_processGO:0018315 molybdenum incorporation into molybdenum-molybdopterin complex IBA
 biological_processGO:0032324 molybdopterin cofactor biosynthetic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0072579 glycine receptor clustering IBA
 biological_processGO:0097112 gamma-aminobutyric acid receptor clustering IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008940 nitrate reductase activity IMP
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0043546 molybdopterin cofactor binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061598 molybdopterin adenylyltransferase activity IBA
 molecular_functionGO:0061599 molybdopterin molybdotransferase activity TAS


Pathways (from Reactome)
Pathway description
Molybdenum cofactor biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000817 Poor eye contact 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002267 Exaggerated startle response "An exaggerated startle reaction in response to a sudden unexpected visual or acoustic stimulus, or a quick movement near the face." [HPO:curators]
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 HP:0002359 Frequent falls 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002375 Hypokinesia 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002421 Poor head control 
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 HP:0002827 Dislocated hips 
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 HP:0002835 Aspiration 
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 HP:0003552 Muscle stiffness 
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 HP:0003570 Molybdenum cofactor deficiency 
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 HP:0003593 Early onset 
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 HP:0005268 Increased risk of spontaneous abortion 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100633 Esophagitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000171723 GPHN / Q9NQX3 / gephyrin  / complex






 

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