ENSGALG00000002127


Gallus gallus

Features
Gene ID: ENSGALG00000002127
  
Biological name :LSM10
  
Synonyms : LSM10 / LSM10, U7 small nuclear RNA associated
  
Possible biological names infered from orthology : Q8QZX5 / Q969L4 / U7 snRNP-specific Sm-like protein LSM10
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 4050244
Gene end: 4051268
  
Corresponding Affymetrix probe sets: GgaAffx.1408.1.A1_at (Chicken Array)   GgaAffx.1408.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003319
NCBI entrez gene - 419621     See in Manteia.
RefSeq - XM_004947764
RefSeq - XM_015297789
RefSeq - XM_417768
swissprot - E1BY33
Ensembl - ENSGALG00000002127
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm10ENSDARG00000101222Danio rerio
 LSM10ENSG00000181817Homo sapiens
 Lsm10ENSMUSG00000050188Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0071208 histone pre-mRNA DCP binding IEA
 molecular_functionGO:0071209 U7 snRNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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