ENSGALG00000002170


Gallus gallus

Features
Gene ID: ENSGALG00000002170
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Nr1h5
  
Species: Gallus gallus
  
Chr. number: 26
Strand: 1
Band:
Gene start: 3945333
Gene end: 3952283
  
Corresponding Affymetrix probe sets: GgaAffx.1446.1.S1_at (Chicken Array)   GgaAffx.1446.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003395
Ensembl peptide - ENSGALP00000059302
Ensembl peptide - ENSGALP00000047829
NCBI entrez gene - 419888     See in Manteia.
RefSeq - XM_004935007
swissprot - A0A1L1RKM7
swissprot - A0A1D5P564
swissprot - F1NXG6
Ensembl - ENSGALG00000002170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr1h5ENSDARG00000031046Danio rerio
 Nr1h5ENSMUSG00000048938Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR1H4 / nuclear receptor subfamily 1 group H member 4 / Q60641* / Q96RI1* / Bile acid receptor *ENSGALG0000001159449
NR1H3 / nuclear receptor subfamily 1 group H member 3 / Q13133* / Q9Z0Y9* / Mus musculus nuclear receptor subfamily 1, group H, member 3 (Nr1h3), transcript variant 3, mRNA.*ENSGALG0000003805930
THRB / P68306 / Thyroid hormone receptor beta / P10828* / P37242*ENSGALG0000001129425
THRA / Gallus gallus thyroid hormone receptor, alpha (THRA), mRNA. / P10827* / P63058* / thyroid hormone receptor, alpha*ENSGALG0000004001723
RARB / P22448 / Retinoic acid receptor beta / P10826* / P22605*ENSGALG0000001129822
RARA / retinoic acid receptor alpha / P10276* / P11416*ENSGALG0000003793521


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR023257  Liver X receptor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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