ENSMUSG00000048938


Mus musculus

Features
Gene ID: ENSMUSG00000048938
  
Biological name :Nr1h5
  
Synonyms : Nr1h5
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F2.2
Gene start: 102939658
Gene end: 102964133
  
Corresponding Affymetrix probe sets: 10500780 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000052557
Ensembl peptide - ENSMUSP00000143764
Ensembl peptide - ENSMUSP00000143445
Ensembl peptide - ENSMUSP00000142799
Ensembl peptide - ENSMUSP00000142345
NCBI entrez gene - 381463     See in Manteia.
MGI - MGI:3026618
RefSeq - XM_011240153
RefSeq - NM_198658
RefSeq - NM_201619
RefSeq - NM_201622
RefSeq - XM_006501623
RefSeq - XM_006501624
RefSeq - XM_006501626
RefSeq Peptide - NP_941060
RefSeq Peptide - NP_963913
RefSeq Peptide - NP_963916
swissprot - E9Q5A6
swissprot - A0A0G2JDF2
swissprot - A0A0G2JEJ9
swissprot - A0A0G2JGZ7
swissprot - A0A0G2JG67
Ensembl - ENSMUSG00000048938
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr1h5ENSDARG00000031046Danio rerio
 ENSGALG00000002170Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Nr1h4 / Q60641 / Bile acid receptor / Q96RI1* / nuclear receptor subfamily 1 group H member 4*ENSMUSG0000004763841
Nr1h3 / Q9Z0Y9 / Mus musculus nuclear receptor subfamily 1, group H, member 3 (Nr1h3), transcript variant 3, mRNA. / Q13133* / nuclear receptor subfamily 1 group H member 3*ENSMUSG0000000210829
Nr1h2 / Q60644 / Oxysterols receptor LXR-beta / P55055* / nuclear receptor subfamily 1 group H member 2*ENSMUSG0000006060126
Thrb / P37242 / Thyroid hormone receptor beta / P10828*ENSMUSG0000002177922
Rarb / P22605 / retinoic acid receptor, beta / P10826*ENSMUSG0000001749121
Vdr / P48281 / vitamin D (1,25-dihydroxyvitamin D3) receptor / P11473* / vitamin D receptor*ENSMUSG0000002247921
Rara / P11416 / retinoic acid receptor, alpha / P10276*ENSMUSG0000003799221
Thra / P63058 / Thyroid hormone receptor alpha / P10827*ENSMUSG0000005875621
Rarg / P18911 / Retinoic acid receptor gamma / P13631*ENSMUSG0000000128820
Nr1i3 / O35627 / Nuclear receptor subfamily 1 group I member 3 / Q14994*ENSMUSG0000000567719
Nr1i2 / O54915 / Nuclear receptor subfamily 1 group I member 2 / O75469*ENSMUSG0000002280919


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR023257  Liver X receptor
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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