ENSGALG00000002678


Gallus gallus

Features
Gene ID: ENSGALG00000002678
  
Biological name :CSPG4
  
Synonyms : chondroitin sulfate proteoglycan 4 / CSPG4
  
Possible biological names infered from orthology : Q6UVK1 / Q8VHY0
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 2637608
Gene end: 2655172
  
Corresponding Affymetrix probe sets: Gga.5496.1.S1_at (Chicken Array)   GgaAffx.1718.1.S1_at (Chicken Array)   GgaAffx.1744.1.S1_at (Chicken Array)   GgaAffx.6203.1.S1_at (Chicken Array)   GgaAffx.6203.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004211
NCBI entrez gene - 425524     See in Manteia.
RefSeq - XM_004943707
swissprot - F1NG70
Ensembl - ENSGALG00000002678
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cspg4ENSDARG00000078227Danio rerio
 CSPG4ENSG00000173546Homo sapiens
 Cspg4ENSMUSG00000032911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BC067074* / cDNA sequence BC067074*ENSGALG0000002056132
FRAS1 / Fraser extracellular matrix complex subunit 1 / Q80T14* / Q86XX4* / Extracellular matrix protein FRAS1 *ENSGALG0000001031617
FREM2 / FRAS1 related extracellular matrix protein 2 / Q5SZK8* / Q6NVD0*ENSGALG0000003367116
FREM1 / FRAS1 related extracellular matrix 1 / Q5H8C1* / Q684R7* / FRAS1-related extracellular matrix protein 1 *ENSGALG0000000542615


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000187 activation of MAPK activity IEA
 biological_processGO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008347 glial cell migration IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0050731 positive regulation of peptidyl-tyrosine phosphorylation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0019901 protein kinase binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
Chondroitin sulfate biosynthesis
Dermatan sulfate biosynthesis
CS/DS degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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