ENSGALG00000003529


Gallus gallus
intermediateSYNCfilamentproteinsyncoilinfilament-basedprocesscytoplasmcytosolzdiscneuromuscularjunctionsarcolemmastructuralmoleculeactivity

Features
Gene ID: ENSGALG00000003529
  
Biological name :SYNC
  
Synonyms : SYNC / syncoilin, intermediate filament protein
  
Possible biological names infered from orthology : Q9EPM5 / Q9H7C4 / syncoilin
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 5250048
Gene end: 5253620
  
Corresponding Affymetrix probe sets: GgaAffx.2198.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005573
NCBI entrez gene - 419664     See in Manteia.
RefSeq - XM_015297850
RefSeq - XM_015297851
RefSeq - XM_417811
swissprot - F1NM11
Ensembl - ENSGALG00000003529
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syncENSDARG00000035944Danio rerio
 SYNCENSG00000162520Homo sapiens
 SyncENSMUSG00000001333Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR027702  Syncoilin


Gene Ontology (GO)
intermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based processintermediate filament-based process
cellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellorganellesupramolecular complexsynapsemembranecellcellorganelleorganellesupramolecular complexsupramolecular complexsynapsesynapsemembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0045103 intermediate filament-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0030018 Z disc IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 cellular_componentGO:0042383 sarcolemma IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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