ENSGALG00000003554


Gallus gallus

Features
Gene ID: ENSGALG00000003554
  
Biological name :OPTC
  
Synonyms : OPTC / opticin precursor
  
Possible biological names infered from orthology : opticin / opticin isoform 4 / Q9UBM4
  
Species: Gallus gallus
  
Chr. number: 26
Strand: 1
Band:
Gene start: 5176853
Gene end: 5180319
  
Corresponding Affymetrix probe sets: Gga.9465.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056729
Ensembl peptide - ENSGALP00000005614
Ensembl peptide - ENSGALP00000044906
NCBI entrez gene - 395130     See in Manteia.
RefSeq - XM_015298882
RefSeq - NM_204473
RefSeq - XM_015298880
RefSeq - XM_015298881
RefSeq Peptide - NP_989804
swissprot - F1NJV2
swissprot - A0A1D5NX13
Ensembl - ENSGALG00000003554
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 optcENSDARG00000014358Danio rerio
 OPTCENSG00000188770Homo sapiens
 OptcENSMUSG00000010311Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EPYC / Q90944 / Epiphycan / P70186* / Q99645*ENSGALG0000001126942
OGN / Q9W6H0 / Mimecan / P20774* / Q62000* / osteoglycin*ENSGALG0000002673633


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR027217  Epiphycan
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003580 MMP2 / Q90611 / 72 kDa type IV collagenase / P08253* / P33434* / matrix metallopeptidase 2* / 72 kDa type IV collagenase PEX*  / reaction
 ENSGALG00000017183 MMP13 / collagenase 3 precursor / P45452* / P33435* / Collagenase 3 * / matrix metallopeptidase 13*  / reaction






 

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© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr