ENSGALG00000003771


Gallus gallus

Features
Gene ID: ENSGALG00000003771
  
Biological name :SIN3B
  
Synonyms : SIN3B / SIN3 transcription regulator family member B
  
Possible biological names infered from orthology : O75182 / Q62141 / transcriptional regulator, SIN3B (yeast)
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 4279731
Gene end: 4291081
  
Corresponding Affymetrix probe sets: GgaAffx.2359.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005972
Ensembl peptide - ENSGALP00000047041
NCBI entrez gene - 420140     See in Manteia.
RefSeq - XM_015300175
swissprot - A0A1D5P2Y9
swissprot - F1NMJ8
Ensembl - ENSGALG00000003771
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sin3bENSDARG00000062472Danio rerio
 SIN3BENSG00000127511Homo sapiens
 Sin3bENSMUSG00000031622Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIN3A / SIN3 transcription regulator family member A / Q60520* / Q96ST3* / Mus musculus transcriptional regulator, SIN3A (yeast) (Sin3a), transcript variant 4, mRNA.*ENSGALG0000000164454


Protein motifs (from Interpro)
Interpro ID Name
 IPR003822  Paired amphipathic helix
 IPR013194  Histone deacetylase interacting domain
 IPR031693  Sin3, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016575 histone deacetylation IBA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000805 X chromosome IEA
 cellular_componentGO:0000806 Y chromosome IEA
 cellular_componentGO:0001741 XY body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016580 Sin3 complex IBA
 cellular_componentGO:0030849 autosome IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0004407 histone deacetylase activity IBA


Pathways (from Reactome)
Pathway description
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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