ENSGALG00000004286


Gallus gallus

Features
Gene ID: ENSGALG00000004286
  
Biological name :COL13A1
  
Synonyms : COL13A1 / collagen type XIII alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XIII) chain / Q5TAT6 / Q9R1N9
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 11020202
Gene end: 11048579
  
Corresponding Affymetrix probe sets: GgaAffx.2655.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046102
Ensembl peptide - ENSGALP00000046751
Ensembl peptide - ENSGALP00000057501
Ensembl peptide - ENSGALP00000006805
swissprot - F1NWY2
swissprot - A0A1D5P256
swissprot - A0A1D5PX11
swissprot - A0A1D5P0C7
Ensembl - ENSGALG00000004286
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5TAT6ENSG00000197467Homo sapiens
 Q9R1N9ENSMUSG00000058806Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL9A1 / collagen type IX alpha 1 chain / P20849*ENSGALG0000001597038
COL25A1 / collagen type XXV alpha 1 chain / Q99MQ5* / Q9BXS0* / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component*ENSGALG0000003941138
COL9A2 / collagen type IX alpha 2 chain / Q14055*ENSGALG0000002752637
COL9A3 / collagen alpha-3(IX) chain precursor / Q14050* / collagen, type IX, alpha 3* / collagen type IX alpha 3 chain*ENSGALG0000000562836
COL23A1 / collagen type XXIII alpha 1 chain / Q86Y22* / Q8K4G2* / Collagen alpha-1(XXIII) chain *ENSGALG0000000670834


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001763 morphogenesis of a branching structure IEA
 biological_processGO:0001958 endochondral ossification IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005911 cell-cell junction IEA
 molecular_functionGO:0008201 heparin binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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