ENSGALG00000006708


Gallus gallus

Features
Gene ID: ENSGALG00000006708
  
Biological name :COL23A1
  
Synonyms : COL23A1 / collagen type XXIII alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XXIII) chain / Q86Y22 / Q8K4G2
  
Species: Gallus gallus
  
Chr. number: 13
Strand: 1
Band:
Gene start: 14256638
Gene end: 14283932
  
Corresponding Affymetrix probe sets: GgaAffx.22955.1.S1_at (Chicken Array)   GgaAffx.24414.1.S1_at (Chicken Array)   GgaAffx.4173.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010837
NCBI entrez gene - 425481     See in Manteia.
RefSeq - XM_003642083
swissprot - F1NZZ3
Ensembl - ENSGALG00000006708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-160j14.3ENSDARG00000089078Danio rerio
 si:dkeyp-44a8.4ENSDARG00000095339Danio rerio
 Q86Y22ENSG00000050767Homo sapiens
 Q8K4G2ENSMUSG00000063564Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL25A1 / collagen type XXV alpha 1 chain / Q99MQ5* / Q9BXS0* / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component*ENSGALG0000003941151
COL13A1 / collagen type XIII alpha 1 chain / Q5TAT6* / Q9R1N9* / Collagen alpha-1(XIII) chain *ENSGALG0000000428642
COL9A2 / collagen type IX alpha 2 chain / Q14055*ENSGALG0000002752641
COL9A3 / collagen alpha-3(IX) chain precursor / Q14050* / collagen, type IX, alpha 3* / collagen type IX alpha 3 chain*ENSGALG0000000562840
COL9A1 / collagen type IX alpha 1 chain / P20849*ENSGALG0000001597039


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr