ENSGALG00000004888


Gallus gallus
regulationtranscriptionRAI1bindingrnapolymeraseiizincfingerphd-typeskeletaldevelopmentcircadiangeneexpressionmulticellularorganismgrowthdna-templatednucleusnucleoplasmmitochondriondna-bindingfactoractivityenhancerregulatoryregiondnametalion

Features
Gene ID: ENSGALG00000004888
  
Biological name :RAI1
  
Synonyms : RAI1 / retinoic acid induced 1
  
Possible biological names infered from orthology : Q61818 / Q7Z5J4
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 4926676
Gene end: 4933844
  
Corresponding Affymetrix probe sets: GgaAffx.3032.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007794
NCBI entrez gene - 427664     See in Manteia.
RefSeq - XM_015294408
RefSeq - XM_015294409
RefSeq - XM_015294410
swissprot - E1BXD2
Ensembl - ENSGALG00000004888
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rai1ENSDARG00000076679Danio rerio
 RAI1ENSG00000108557Homo sapiens
 Rai1ENSMUSG00000062115Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCF20 / transcription factor 20 / Q9UGU0* / Q9EPQ8* / Zfp957* / zinc finger protein 957*ENSGALG0000001187822


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type


Gene Ontology (GO)
anatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcircadian rhythmdevelopmental growthanatomical structanatomical structure developmentnitrogen compoundnitrogen compound metabolic processbiosynthetic procbiosynthetic processcellular metabolicellular metabolic processprimary metabolicprimary metabolic processorganic substanceorganic substance metabolic processcircadian rhythmcircadian rhythmdevelopmental grodevelopmental growth
DNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingion bindingDNA-binding transcription factor acDNA-binding transcription factor activityorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingion bindingion binding
cellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0032922 circadian regulation of gene expression IEA
 biological_processGO:0040015 negative regulation of multicellular organism growth IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0035326 enhancer binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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