ENSGALG00000005102


Gallus gallus

Features
Gene ID: ENSGALG00000005102
  
Biological name :CDH4
  
Synonyms : cadherin-4 precursor / CDH4
  
Possible biological names infered from orthology : cadherin 4 / P39038 / P55283
  
Species: Gallus gallus
  
Chr. number: 20
Strand: 1
Band:
Gene start: 7546069
Gene end: 7840288
  
Corresponding Affymetrix probe sets: Gga.13203.1.S1_at (Chicken Array)   Gga.3334.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055034
Ensembl peptide - ENSGALP00000008166
NCBI entrez gene - 419222     See in Manteia.
RefSeq - XM_015296375
RefSeq - NM_001004391
RefSeq - XM_015296374
RefSeq Peptide - NP_001004391
swissprot - F1NYV5
swissprot - A0A1D5PQ72
Ensembl - ENSGALG00000005102
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh4ENSDARG00000015002Danio rerio
 CDH4ENSG00000179242Homo sapiens
 Cdh4ENSMUSG00000000305Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH2 / P10288 / Cadherin-2 / P15116* / P19022*ENSGALG0000001513265
CDH1 / cadherin 1 / P12830*ENSGALG0000000060843
CDH15 / cadherin 15 / P33146* / P55291*ENSGALG0000003004037
CDH13 / P33150 / Cadherin-13 / P55290* / Q9WTR5*ENSGALG0000000548331
DSC2* / DSC3* / DSC1* / Q14574* / P55850* / Q02487* / Q08554* / P55292* / P55849* / desmocollin 3* / desmocollin 2* / desmocollin 1*ENSGALG0000001514028


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR014868  Cadherin prodomain
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0045773 positive regulation of axon extension IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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