ENSGALG00000005171


Gallus gallus

Features
Gene ID: ENSGALG00000005171
  
Biological name :AP1S3
  
Synonyms : adaptor related protein complex 1 sigma 3 subunit / AP1S3
  
Possible biological names infered from orthology : AP-1 complex subunit sigma-3 / Q7TN05 / Q96PC3
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 8269421
Gene end: 8285174
  
Corresponding Affymetrix probe sets: Gga.10956.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008288
Ensembl peptide - ENSGALP00000059702
NCBI entrez gene - 424807     See in Manteia.
RefSeq - XM_015276905
RefSeq - XM_015276902
RefSeq - XM_015276903
RefSeq - XM_015276904
RefSeq - NM_001030008
RefSeq Peptide - NP_001025179
swissprot - E1BWN8
swissprot - A0A1L1RLP9
Ensembl - ENSGALG00000005171
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ap1s3aENSDARG00000110439Danio rerio
 ap1s3bENSDARG00000027966Danio rerio
 AP1S3ENSG00000152056Homo sapiens
 Ap1s3ENSMUSG00000054702Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AP1S2 / AP-1 complex subunit sigma-2 / P56377* / Q9DB50* / adaptor related protein complex 1 sigma 2 subunit*ENSGALG0000001655171
AP4S1 / adaptor related protein complex 4 sigma 1 subunit / Q9WVL1* / Q9Y587* / AP-4 complex subunit sigma-1 *ENSGALG0000000993626


Protein motifs (from Interpro)
Interpro ID Name
 IPR000804  Clathrin adaptor complex, small chain
 IPR011012  Longin-like domain superfamily
 IPR016635  Adaptor protein complex, sigma subunit
 IPR022775  AP complex, mu/sigma subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006605 protein targeting IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0008565 protein transporter activity IEA


Pathways (from Reactome)
Pathway description
MHC class II antigen presentation
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000004594 CD74 / CD74 molecule / P04233* / P04441* / CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)*  / complex
 ENSGALG00000042213 AP1B1 / adaptor related protein complex 1 beta 1 subunit / O35643* / Q10567* / Mus musculus adaptor protein complex AP-1, beta 1 subunit (Ap1b1), transcript variant 4, mRNA.*  / complex
 ENSGALG00000005139 CLTC / clathrin heavy chain / Q00610*  / complex
 ENSGALG00000015326 CLTA / clathrin light chain A / P09496*  / complex
 ENSGALG00000014853 CLVS2 / clavesin 2 / Q5SYC1* / Q8BG92*  / complex






 

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