ENSGALG00000005552


Gallus gallus

Features
Gene ID: ENSGALG00000005552
  
Biological name :PTBP2
  
Synonyms : polypyrimidine tract binding protein 2 / PTBP2
  
Possible biological names infered from orthology : Q91Z31 / Q9UKA9
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 12937970
Gene end: 12999831
  
Corresponding Affymetrix probe sets: Gga.11116.1.S1_at (Chicken Array)   Gga.12068.1.S1_s_at (Chicken Array)   Gga.13699.1.A1_at (Chicken Array)   Gga.13699.1.S1_at (Chicken Array)   Gga.13699.1.S1_s_at (Chicken Array)   GgaAffx.3483.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046021
Ensembl peptide - ENSGALP00000008892
NCBI entrez gene - 424479     See in Manteia.
RefSeq - XM_422322
RefSeq - XM_015290737
RefSeq - XM_015290738
RefSeq - XM_004936574
RefSeq - XM_004936575
RefSeq - XM_015290733
RefSeq - XM_015290734
RefSeq - XM_015290735
RefSeq - XM_015290736
swissprot - F1NRD6
swissprot - A0A1D5P047
Ensembl - ENSGALG00000005552
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptbp2aENSDARG00000101947Danio rerio
 ptbp2bENSDARG00000015901Danio rerio
 PTBP2ENSG00000117569Homo sapiens
 Ptbp2ENSMUSG00000028134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTBP1 / polypyrimidine tract-binding protein 1 / P26599*ENSGALG0000000196267
PTBP3 / polypyrimidine tract binding protein 3 / O95758* / Q8BHD7*ENSGALG0000001566955
HNRNPLL / heterogeneous nuclear ribonucleoprotein L-like / Q8WVV9* / Q921F4* / Heteroous nuclear ribonucleoprotein L-like *ENSGALG0000000850423
Hnrnpl* / Q8R081* / AC008982.1* / Heteroous nuclear ribonucleoprotein L *ENSGALG0000004392910


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006376 mRNA splice site selection IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0033119 negative regulation of RNA splicing IEA
 biological_processGO:2000177 regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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