ENSGALG00000015669


Gallus gallus

Features
Gene ID: ENSGALG00000015669
  
Biological name :PTBP3
  
Synonyms : polypyrimidine tract binding protein 3 / PTBP3
  
Possible biological names infered from orthology : O95758 / Q8BHD7
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 66065527
Gene end: 66114549
  
Corresponding Affymetrix probe sets: Gga.16469.1.S1_at (Chicken Array)   GgaAffx.20531.1.S1_s_at (Chicken Array)   GgaAffx.9985.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025221
NCBI entrez gene - 427333     See in Manteia.
RefSeq - XM_004949517
RefSeq - XM_015280701
RefSeq - XM_015280702
RefSeq - XM_015280703
RefSeq - XM_015280704
RefSeq - XM_424912
RefSeq - XM_004949515
swissprot - F1ND44
Ensembl - ENSGALG00000015669
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptbp3ENSDARG00000043757Danio rerio
 PTBP3ENSG00000119314Homo sapiens
 Ptbp3ENSMUSG00000028382Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTBP1 / polypyrimidine tract-binding protein 1 / P26599*ENSGALG0000000196262
PTBP2 / polypyrimidine tract binding protein 2 / Q91Z31* / Q9UKA9*ENSGALG0000000555259
HNRNPLL / heterogeneous nuclear ribonucleoprotein L-like / Q8WVV9* / Q921F4* / Heteroous nuclear ribonucleoprotein L-like *ENSGALG0000000850424
Hnrnpl* / Q8R081* / AC008982.1* / Heteroous nuclear ribonucleoprotein L *ENSGALG0000004392911


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR033110  ROD1, RNA recognition motif 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0033119 negative regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr