ENSGALG00000006490


Gallus gallus

Features
Gene ID: ENSGALG00000006490
  
Biological name :SCN3B
  
Synonyms : SCN3B / sodium voltage-gated channel beta subunit 3
  
Possible biological names infered from orthology : Q8BHK2 / Q9NY72 / sodium channel, voltage-gated, type III, beta
  
Species: Gallus gallus
  
Chr. number: 24
Strand: 1
Band:
Gene start: 2887643
Gene end: 2893626
  
Corresponding Affymetrix probe sets: Gga.10168.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010476
NCBI entrez gene - 419744     See in Manteia.
RefSeq - XM_015298163
RefSeq - XM_015298164
RefSeq - XM_015298165
RefSeq - XM_015298166
RefSeq - XM_015298167
RefSeq - XM_015298168
RefSeq - XM_015298169
RefSeq - XM_015298170
RefSeq - XM_015298171
RefSeq - XM_004948010
swissprot - E1BZ61
Ensembl - ENSGALG00000006490
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn3bENSDARG00000062359Danio rerio
 SCN3BENSG00000166257Homo sapiens
 Scn3bENSMUSG00000049281Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR027096  Sodium channel subunit beta-3
 IPR027098  Sodium channel subunit beta-1/beta-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0010460 positive regulation of heart rate IEA
 biological_processGO:0010765 positive regulation of sodium ion transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0051899 membrane depolarization IEA
 biological_processGO:0060048 cardiac muscle contraction IEA
 biological_processGO:0060371 regulation of atrial cardiac muscle cell membrane depolarization IEA
 biological_processGO:0060373 regulation of ventricular cardiac muscle cell membrane depolarization IEA
 biological_processGO:0061337 cardiac conduction IEA
 biological_processGO:0072659 protein localization to plasma membrane IEA
 biological_processGO:0086002 cardiac muscle cell action potential involved in contraction IEA
 biological_processGO:0086005 ventricular cardiac muscle cell action potential IEA
 biological_processGO:0086010 membrane depolarization during action potential IEA
 biological_processGO:0086012 membrane depolarization during cardiac muscle cell action potential IEA
 biological_processGO:0086014 atrial cardiac muscle cell action potential IEA
 biological_processGO:0086015 SA node cell action potential IEA
 biological_processGO:0086091 regulation of heart rate by cardiac conduction IEA
 biological_processGO:2000649 regulation of sodium ion transmembrane transporter activity IEA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030018 Z disc IEA
 molecular_functionGO:0017080 sodium channel regulator activity IEA
 molecular_functionGO:0044325 ion channel binding IEA
 molecular_functionGO:0086006 voltage-gated sodium channel activity involved in cardiac muscle cell action potential IEA


Pathways (from Reactome)
Pathway description
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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