ENSGALG00000006531


Gallus gallus
bindingTRA2Bmrnasplicingregulationviaspliceosomernadomainproteincomplexrecognitionmotifnucleotide-bindingalpha-betaplaitsuperfamilyalternativecerebralcortexregionalizationoligomerizationcellularresponseglucosestimulusembryonicbraindevelopmentnucleusnuclear

Features
Gene ID: ENSGALG00000006531
  
Biological name :TRA2B
  
Synonyms : TRA2B / transformer 2 beta homolog
  
Possible biological names infered from orthology : Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA. / P62995 / P62996
  
Species: Gallus gallus
  
Chr. number: 9
Strand: 1
Band:
Gene start: 4389946
Gene end: 4408369
  
Corresponding Affymetrix probe sets: Gga.4158.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050676
Ensembl peptide - ENSGALP00000010541
NCBI entrez gene - 395403     See in Manteia.
RefSeq - XM_015276812
RefSeq - NM_204678
RefSeq - XM_015276811
RefSeq Peptide - NP_990009
swissprot - Q9DDU8
swissprot - A0A1D5PD35
Ensembl - ENSGALG00000006531
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tra2bENSDARG00000002168Danio rerio
 TRA2BENSG00000136527Homo sapiens
 Tra2bENSMUSG00000022858Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRA2A / transformer-2 protein homolog alpha / Q13595* / transformer 2 alpha* / transformer 2 alpha homolog*ENSGALG0000001097368
RBMX / RNA-binding motif protein, X chromosome / P38159* / Q9WV02* / RNA binding motif protein, X-linked*ENSGALG0000000645729
CIRBP / cold inducible RNA binding protein / P60824* / Q14011*ENSGALG0000003091819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processanatomical structure developmentcellular component organizationcellular component biogenesisresponse to chemicalregulation of biological qualitycellular response to stimulusnitrogen componitrogen compound metabolic processcellular metabcellular metabolic processprimary metaboprimary metabolic processorganic substaorganic substance metabolic processanatomical stranatomical structure developmentcellular compocellular component organizationcellular compocellular component biogenesisresponse to chresponse to chemicalregulation of regulation of biological qualitycellular respocellular response to stimulus
organic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingprotein bindingprotein binding
cellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellorganellemembranemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembranemembranemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0021796 cerebral cortex regionalization IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 biological_processGO:1990403 embryonic brain development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0036002 pre-mRNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0070717 poly-purine tract binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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