ENSGALG00000030918


Gallus gallus

Features
Gene ID: ENSGALG00000030918
  
Biological name :CIRBP
  
Synonyms : CIRBP / cold inducible RNA binding protein
  
Possible biological names infered from orthology : P60824 / Q14011
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 3101530
Gene end: 3108568
  
Corresponding Affymetrix probe sets: Gga.4756.1.S1_at (Chicken Array)   Gga.4756.1.S1_a_at (Chicken Array)   GgaAffx.11739.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045493
Ensembl peptide - ENSGALP00000057356
Ensembl peptide - ENSGALP00000047114
Ensembl peptide - ENSGALP00000045344
NCBI entrez gene - 425789     See in Manteia.
RefSeq - XM_015299938
RefSeq - XM_015299933
RefSeq - XM_015299934
RefSeq - XM_015299935
RefSeq - XM_015299936
RefSeq - XM_015299937
RefSeq - NM_001031347
RefSeq Peptide - NP_001026518
swissprot - A0A1D5P359
swissprot - A0A1D5NYN4
swissprot - A0A1D5NY87
swissprot - Q5ZLU8
Ensembl - ENSGALG00000030918
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cirbpaENSDARG00000103672Danio rerio
 cirbpbENSDARG00000013351Danio rerio
 CIRBPENSG00000099622Homo sapiens
 CirbpENSMUSG00000045193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBMX / RNA-binding motif protein, X chromosome / P38159* / Q9WV02* / RNA binding motif protein, X-linked*ENSGALG0000000645751
TRA2B / transformer 2 beta homolog / P62995* / P62996* / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA.*ENSGALG0000000653129
TRA2A / transformer-2 protein homolog alpha / Q13595* / transformer 2 alpha* / transformer 2 alpha homolog*ENSGALG0000001097328


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0030308 negative regulation of cell growth IEA
 biological_processGO:0034063 stress granule assembly IEA
 biological_processGO:0070417 cellular response to cold IEA
 biological_processGO:1902806 regulation of cell cycle G1/S phase transition IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008266 poly(U) RNA binding IEA
 molecular_functionGO:0030371 translation repressor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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