ENSDARG00000013351


Danio rerio

Features
Gene ID: ENSDARG00000013351
  
Biological name :cirbpb
  
Synonyms : cirbpb / cold inducible RNA binding protein b
  
Possible biological names infered from orthology : CIRBP / cold inducible RNA binding protein / P60824 / Q14011
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 18542010
Gene end: 18546649
  
Corresponding Affymetrix probe sets: Dr.4947.1.S1_at (Zebrafish Array)   Dr.4947.1.S2_at (Zebrafish Array)   NM_001040321_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000096178
Ensembl peptide - ENSDARP00000096177
Ensembl peptide - ENSDARP00000117191
Ensembl peptide - ENSDARP00000136812
NCBI entrez gene - 678563     See in Manteia.
RefSeq - NM_001040321
RefSeq Peptide - NP_001035411
swissprot - F1QPW8
swissprot - A0A0R4IMS2
swissprot - F1R6L3
swissprot - F1R6L4
swissprot - Q7ZUQ9
ZFIN ID - ZDB-GENE-030131-5841
Ensembl - ENSDARG00000013351
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CIRBPENSGALG00000030918Gallus gallus
 CIRBPENSG00000099622Homo sapiens
 CirbpENSMUSG00000045193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cirbpa / cold inducible RNA binding protein a / CIRBP* / Q14011* / cold inducible RNA binding protein*ENSDARG0000010367255
rbmx / Q7ZWA3 / RNA binding motif protein, X-linked / A6NDE4* / A6NEQ0* / Gm3376* / Gm4064* / Gm7324* / O35698* / O75526* / P0C7P1* / P0DJD3* / P38159* / Q15415* / Q60990* / Q8N7X1* / Q91VM...ENSDARG0000001424438
tra2a / transformer 2 alpha homolog / Q13595* / transformer 2 alpha*ENSDARG0000000786325
tra2b / transformer 2 beta homolog / P62995* / P62996* / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA.*ENSDARG0000000216823


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034278  RBM3/CIRBP, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009409 response to cold IDA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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