ENSDARG00000103672


Danio rerio

Features
Gene ID: ENSDARG00000103672
  
Biological name :cirbpa
  
Synonyms : cirbpa / cold inducible RNA binding protein a
  
Possible biological names infered from orthology : CIRBP / cold inducible RNA binding protein / P60824 / Q14011
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 58841181
Gene end: 58848884
  
Corresponding Affymetrix probe sets: Dr.24945.2.S1_a_at (Zebrafish Array)   NM_001017797_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134395
NCBI entrez gene - 550495     See in Manteia.
RefSeq - NM_001017797
RefSeq Peptide - NP_001017797
swissprot - Q566W6
ZFIN ID - ZDB-GENE-050417-329
Ensembl - ENSDARG00000103672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CIRBPENSGALG00000030918Gallus gallus
 CIRBPENSG00000099622Homo sapiens
 CirbpENSMUSG00000045193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cirbpb / cold inducible RNA binding protein b / CIRBP* / P60824* / Q14011* / cold inducible RNA binding protein*ENSDARG0000001335166
rbmx / Q7ZWA3 / RNA binding motif protein, X-linked / A6NDE4* / A6NEQ0* / Gm3376* / Gm4064* / Gm7324* / O35698* / O75526* / P0C7P1* / P0DJD3* / P38159* / Q15415* / Q60990* / Q8N7X1* / Q91VM...ENSDARG0000001424444
tra2a / transformer 2 alpha homolog / Q13595* / transformer 2 alpha*ENSDARG0000000786328
tra2b / transformer 2 beta homolog / P62995* / P62996* / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA.*ENSDARG0000000216825


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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