ENSGALG00000007750


Gallus gallus

Features
Gene ID: ENSGALG00000007750
  
Biological name :RLIM
  
Synonyms : E3 ubiquitin-protein ligase RLIM / RLIM
  
Possible biological names infered from orthology : Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript variant 2, mRNA. / Q9NVW2 / Q9WTV7 / ring finger protein, LIM domain interacting
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 12395083
Gene end: 12408326
  
Corresponding Affymetrix probe sets: Gga.3176.1.S1_at (Chicken Array)   Gga.3176.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044305
Ensembl peptide - ENSGALP00000012555
NCBI entrez gene - 395630     See in Manteia.
RefSeq - XM_015278187
RefSeq - NM_204828
RefSeq Peptide - NP_990159
swissprot - A0A1D5NVD1
swissprot - F1NRC6
Ensembl - ENSGALG00000007750
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rlimENSDARG00000079306Danio rerio
 RLIMENSG00000131263Homo sapiens
 RlimENSMUSG00000056537Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF6 / ring finger protein 6 / Q9DBU5* / Q9Y252* / E3 ubiquitin-protein ligase RNF6 *ENSGALG0000001710547
RNF38 / ring finger protein 38 / Q8BI21* / Q9H0F5* / Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA.*ENSGALG0000001531113
RNF44 / ring finger protein 44 / Q3UHJ8* / Q7L0R7*ENSGALG0000002644313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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