ENSDARG00000079306


Danio rerio

Features
Gene ID: ENSDARG00000079306
  
Biological name :rlim
  
Synonyms : ring finger protein, LIM domain interacting / rlim
  
Possible biological names infered from orthology : Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript variant 2, mRNA. / Q9NVW2 / Q9WTV7
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 11289851
Gene end: 11304057
  
Corresponding Affymetrix probe sets: Dr.26335.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000100039
Ensembl peptide - ENSDARP00000154614
NCBI entrez gene - 562487     See in Manteia.
swissprot - E7FH41
ZFIN ID - ZDB-GENE-120809-2
Ensembl - ENSDARG00000079306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RLIMENSGALG00000007750Gallus gallus
 RLIMENSG00000131263Homo sapiens
 RlimENSMUSG00000056537Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf6 / ring finger protein (C3H2C3 type) 6 / Q9Y252* / Q9DBU5* / ring finger protein 6* / E3 ubiquitin-protein ligase RNF6 *ENSDARG0000007795540
rnf38 / ring finger protein 38 / Q8BI21* / Q9H0F5* / Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA.*ENSDARG0000006205514
si:ch211-59o9.10ENSDARG0000008996713
rnf44 / Q08CG8 / ring finger protein 44 / Q7L0R7*ENSDARG0000006858211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0017015 regulation of transforming growth factor beta receptor signaling pathway IMP
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism morphology , abnormal
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 ZFA:0001114 head head increased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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