ENSDARG00000077955


Danio rerio

Features
Gene ID: ENSDARG00000077955
  
Biological name :rnf6
  
Synonyms : ring finger protein (C3H2C3 type) 6 / rnf6
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF6 / Q9DBU5 / Q9Y252 / ring finger protein 6
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 21501842
Gene end: 21511737
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131634
Ensembl peptide - ENSDARP00000099863
NCBI entrez gene - 100359398     See in Manteia.
RefSeq - XM_021473772
swissprot - F1R4P2
swissprot - A0A0R4IBU7
ZFIN ID - ZDB-GENE-100209-1
Ensembl - ENSDARG00000077955
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF6ENSGALG00000017105Gallus gallus
 RNF6ENSG00000127870Homo sapiens
 Rnf6ENSMUSG00000029634Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rlim / ring finger protein, LIM domain interacting / Q9NVW2* / Q9WTV7* / Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript variant 2, mRNA.*ENSDARG0000007930635
rnf38 / ring finger protein 38 / Q8BI21* / Q9H0F5* / Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA.*ENSDARG0000006205511
rnf44 / Q08CG8 / ring finger protein 44 / Q7L0R7*ENSDARG0000006858210
si:ch211-59o9.10ENSDARG0000008996710


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0060765 regulation of androgen receptor signaling pathway IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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