ENSGALG00000007938


Gallus gallus

Features
Gene ID: ENSGALG00000007938
  
Biological name :RAG1
  
Synonyms : RAG1 / V(D)J recombination-activating protein 1
  
Possible biological names infered from orthology : P15918 / P15919 / recombination activating 1 / V(D)J recombination-activating protein 1 Endonuclease RAG1 E3 ubiquitin-protein ligase RAG1
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 19508154
Gene end: 19511279
  
Corresponding Affymetrix probe sets: GgaAffx.4975.1.A1_at (Chicken Array)   GgaAffx.4975.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056474
NCBI entrez gene - 423164     See in Manteia.
RefSeq - NM_001031188
RefSeq Peptide - NP_001026359
swissprot - A0A1D5PU72
Ensembl - ENSGALG00000007938
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rag1ENSDARG00000052122Danio rerio
 RAG1ENSG00000166349Homo sapiens
 Rag1ENSMUSG00000061311Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR019485  V(D)J recombination-activating protein 1, Zinc finger
 IPR023336  RAG nonamer-binding domain
 IPR024627  V(D)J recombination-activating protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002331 pre-B cell allelic exclusion IEA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0010390 histone monoubiquitination IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030183 B cell differentiation IEA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0033151 V(D)J recombination IEA
 biological_processGO:0043029 T cell homeostasis IEA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0045580 regulation of T cell differentiation IEA
 biological_processGO:0045582 positive regulation of T cell differentiation IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0051865 protein autoubiquitination IEA
 biological_processGO:0070233 negative regulation of T cell apoptotic process IEA
 biological_processGO:0070244 negative regulation of thymocyte apoptotic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr