ENSGALG00000009415


Gallus gallus

Features
Gene ID: ENSGALG00000009415
  
Biological name :SMOC1
  
Synonyms : SMOC1 / SPARC related modular calcium binding 1
  
Possible biological names infered from orthology : Q9H4F8
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 27718429
Gene end: 27835276
  
Corresponding Affymetrix probe sets: Gga.16439.1.S1_at (Chicken Array)   GgaAffx.5936.1.S1_at (Chicken Array)   GgaAffx.5936.2.S1_at (Chicken Array)   GgaAffx.5936.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015318
Ensembl peptide - ENSGALP00000053127
Ensembl peptide - ENSGALP00000049124
NCBI entrez gene - 768688     See in Manteia.
RefSeq - XM_001231760
RefSeq - XM_004941688
RefSeq - XM_015287582
swissprot - A0A1D5PJX8
swissprot - A0A1D5P8S5
swissprot - F1NY60
Ensembl - ENSGALG00000009415
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smoc1ENSDARG00000088255Danio rerio
 SMOC1ENSG00000198732Homo sapiens
 Smoc1ENSMUSG00000021136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000001120551


Protein motifs (from Interpro)
Interpro ID Name
 IPR000716  Thyroglobulin type-1
 IPR002350  Kazal domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR019577  SPARC/Testican, calcium-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0045667 regulation of osteoblast differentiation IEA
 biological_processGO:0060173 limb development IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0050840 extracellular matrix binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr