ENSDARG00000088255


Danio rerio

Features
Gene ID: ENSDARG00000088255
  
Biological name :smoc1
  
Synonyms : smoc1 / SPARC related modular calcium binding 1
  
Possible biological names infered from orthology : Q9H4F8
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 48314724
Gene end: 48368231
  
Corresponding Affymetrix probe sets: Dr.14033.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112037
NCBI entrez gene - 100529120     See in Manteia.
RefSeq - NM_001201393
RefSeq Peptide - NP_001188322
swissprot - E7EDQ9
swissprot - E7FH22
ZFIN ID - ZDB-GENE-110310-7
Ensembl - ENSDARG00000088255
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMOC1ENSGALG00000009415Gallus gallus
 SMOC1ENSG00000198732Homo sapiens
 Smoc1ENSMUSG00000021136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smoc2 / SPARC related modular calcium binding 2ENSDARG0000008815745


Protein motifs (from Interpro)
Interpro ID Name
 IPR000716  Thyroglobulin type-1
 IPR002350  Kazal domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR019577  SPARC/Testican, calcium-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IMP
 biological_processGO:0002072 optic cup morphogenesis involved in camera-type eye development IMP
 biological_processGO:0007165 signal transduction IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0050840 extracellular matrix binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000109 forebrain forebrain morphology , abnormal
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 ZFA:0000152 retina retina immature , abnormal
retina ventral region morphology , abnormal
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 ZFA:0001284 optic fissure optic fissure open , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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