ENSGALG00000009896


Gallus gallus

Features
Gene ID: ENSGALG00000009896
  
Biological name :TRERF1
  
Synonyms : transcriptional regulating factor 1 / TRERF1
  
Possible biological names infered from orthology : Q96PN7
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 22909658
Gene end: 22981871
  
Corresponding Affymetrix probe sets: Gga.10472.1.A1_at (Chicken Array)   GgaAffx.23068.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016071
Ensembl peptide - ENSGALP00000048256
Ensembl peptide - ENSGALP00000047207
NCBI entrez gene - 421386     See in Manteia.
RefSeq - XM_015283853
RefSeq - XM_015283850
RefSeq - XM_015283851
RefSeq - XM_015283852
RefSeq - XM_015283849
swissprot - A0A1D5P6D1
swissprot - A0A1D5P3F2
swissprot - E1C1W0
Ensembl - ENSGALG00000009896
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX000363.1ENSDARG00000088631Danio rerio
 Q96PN7ENSG00000124496Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ELMSAN1 / ELM2 and Myb/SANT domain containing 1 / Q6PJG2*ENSGALG0000000928223


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR013087  Zinc finger C2H2-type
 IPR017884  SANT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0000118 histone deacetylase complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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