ENSDARG00000088631


Danio rerio

Features
Gene ID: ENSDARG00000088631
  
Biological name :BX000363.1
  
Synonyms : BX000363.1
  
Possible biological names infered from orthology : Q96PN7 / transcriptional regulating factor 1 / TRERF1
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 6217704
Gene end: 6267717
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000111755
NCBI entrez gene - 100535969     See in Manteia.
RefSeq - XM_009292797
RefSeq - XM_017351739
swissprot - E7EYQ7
Ensembl - ENSDARG00000088631
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRERF1ENSGALG00000009896Gallus gallus
 Q96PN7ENSG00000124496Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elmsan1b / ELM2 and Myb/SANT-like domain containing 1b / Q6PJG2* / ELMSAN1* / ELM2 and Myb/SANT domain containing 1*ENSDARG0000005386419
elmsan1a / ELM2 and Myb/SANT-like domain containing 1a / Q6PJG2* / ELMSAN1* / ELM2 and Myb/SANT domain containing 1*ENSDARG0000001144518
si:dkey-19b23.10ENSDARG0000009841016
znf541 / zinc finger protein 541 / Q0GGX2* / Q9H0D2* / Zfp541*ENSDARG0000005218813


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR017884  SANT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0000118 histone deacetylase complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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