ENSDARG00000052188


Danio rerio

Features
Gene ID: ENSDARG00000052188
  
Biological name :znf541
  
Synonyms : zinc finger protein 541 / znf541
  
Possible biological names infered from orthology : Q0GGX2 / Q9H0D2 / Zfp541
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 61953086
Gene end: 61970674
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115463
swissprot - E9QGE4
ZFIN ID - ZDB-GENE-060526-239
Ensembl - ENSDARG00000052188
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9H0D2ENSG00000118156Homo sapiens
 Q0GGX2ENSMUSG00000078796Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elmsan1b / ELM2 and Myb/SANT-like domain containing 1b / Q6PJG2* / ELMSAN1* / ELM2 and Myb/SANT domain containing 1*ENSDARG0000005386417
BX000363.1 / Q96PN7* / TRERF1* / transcriptional regulating factor 1*ENSDARG0000008863116
elmsan1a / ELM2 and Myb/SANT-like domain containing 1a / Q6PJG2* / ELMSAN1* / ELM2 and Myb/SANT domain containing 1*ENSDARG0000001144515
si:dkey-19b23.10ENSDARG0000009841013


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0000118 histone deacetylase complex IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr