ENSMUSG00000078796


Mus musculus

Features
Gene ID: ENSMUSG00000078796
  
Biological name :Zfp541
  
Synonyms : Q0GGX2 / Zfp541 / zinc finger protein 541
  
Possible biological names infered from orthology : Q9H0D2 / ZNF541
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A2
Gene start: 16061814
Gene end: 16096334
  
Corresponding Affymetrix probe sets: 10550222 (MoGene1.0st)   1440672_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000104149
Ensembl peptide - ENSMUSP00000147475
Ensembl peptide - ENSMUSP00000148143
NCBI entrez gene - 666528     See in Manteia.
MGI - MGI:3647699
RefSeq - XM_011250677
RefSeq - NM_001099277
RefSeq - NM_001347559
RefSeq - XM_011250674
RefSeq - XM_011250675
RefSeq - XM_011250676
RefSeq - XM_006540295
RefSeq - XM_006540296
RefSeq Peptide - NP_001334488
RefSeq Peptide - NP_001092747
swissprot - Q0GGX2
Ensembl - ENSMUSG00000078796
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 znf541ENSDARG00000052188Danio rerio
 Q9H0D2ENSG00000118156Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Elmsan1 / ELM2 and Myb/SANT domain containing 1 / Q6PJG2*ENSMUSG0000004250721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR013087  Zinc finger C2H2-type
 IPR017884  SANT domain
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0000118 histone deacetylase complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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