ENSGALG00000010642


Gallus gallus

Features
Gene ID: ENSGALG00000010642
  
Biological name :IRF2
  
Synonyms : Interferon regulatory factor 2 / IRF2 / Q98925
  
Possible biological names infered from orthology : P14316 / P23906
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 39801172
Gene end: 39842530
  
Corresponding Affymetrix probe sets: Gga.3363.1.S1_at (Chicken Array)   Gga.3363.2.S1_a_at (Chicken Array)   Gga.3363.3.S1_at (Chicken Array)   Gga.3363.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055620
Ensembl peptide - ENSGALP00000037458
Ensembl peptide - ENSGALP00000044884
NCBI entrez gene - 396115     See in Manteia.
RefSeq - XM_015276158
RefSeq - NM_205196
RefSeq - XM_015276155
RefSeq - XM_015276156
RefSeq - XM_015276157
RefSeq - XM_015276154
RefSeq Peptide - NP_990527
swissprot - Q98925
swissprot - A0A1D5NWZ1
Ensembl - ENSGALG00000010642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 irf2ENSDARG00000040465Danio rerio
 IRF2ENSG00000168310Homo sapiens
 Irf2ENSMUSG00000031627Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IRF1 / Q90876 / Interferon regulatory factor 1 / P10914* / P15314*ENSGALG0000000678535
IRF6 / interferon regulatory factor 6 / O14896* / P97431*ENSGALG0000000140522
IRF8 / Q90871 / Interferon regulatory factor 8 / P23611* / Q02556*ENSGALG0000000575721
IRF4 / Q15306* / Q64287* / interferon regulatory factor 4*ENSGALG0000001283020
IRF5 / Gallus gallus interferon regulatory factor 5 (IRF5), mRNA. / P56477* / Q13568* / interferon regulatory factor 5*ENSGALG0000003998219
IRF9 / interferon regulatory factor 9 ENSGALG0000003029118
IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSGALG0000004391315
IRF7 / interferon regulatory factor 3 / P70434* / Q92985* / interferon regulatory factor 7*ENSGALG0000001429714


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017431  Interferon regulatory factor-1/2
 IPR019817  Interferon regulatory factor, conserved site
 IPR031218  Interferon regulatory factor 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005925 focal adhesion IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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