ENSGALG00000011384


Gallus gallus

Features
Gene ID: ENSGALG00000011384
  
Biological name :RCOR1
  
Synonyms : RCOR1 / REST corepressor 1
  
Possible biological names infered from orthology : Q8CFE3 / Q9UKL0
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 49765257
Gene end: 49842630
  
Corresponding Affymetrix probe sets: Gga.12992.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000018546
NCBI entrez gene - 428911     See in Manteia.
RefSeq - XM_015287816
swissprot - E1BWG6
Ensembl - ENSGALG00000011384
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rcor1ENSDARG00000031434Danio rerio
 RCOR1ENSG00000089902Homo sapiens
 Rcor1ENSMUSG00000037896Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RCOR3 / REST corepressor 3 / Q6PGA0* / Q9P2K3*ENSGALG0000000987144
NCOR2 / nuclear receptor corepressor 2 / Q9WU42* / Q9Y618*ENSGALG0000000312023
NCOR1 / nuclear receptor corepressor 1 / O75376* / nuclear receptor co-repressor 1*ENSGALG0000000447723


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017884  SANT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0070933 histone H4 deacetylation IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 cellular_componentGO:1990391 DNA repair complex IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0003714 transcription corepressor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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